What isn't discussed in the episode, yet adds a a substantial subtext to the entire B plot is the fact that the "Leg bone's connected to the thigh bone" song known by so many kids is a verse from a spiritual about a vision in Ezekiel 37:1-14.
The entire discussion about the song and its accuracy is a proxy debate about religion between Bones and Booth. Extending the proxy debate into a parenting metaphor puts some very fascinating twists on the final scene where their daughter is singing the re-written song.
The scene essentially says that religious accommodation will happen in the parenting of the children, but will always be subordinate to science and accuracy. Brennan has become comfortable with limited religion in her daughter's life, but will not tolerate it coming into conflict with the real world as she sees it.